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Download dataset by task

Task 1

Modalities: histopathology (WSI), radiology (mpMRI), and clinical data

Download Training Data
  1. Install AWS CLI https://docs.aws.amazon.com/cli/latest/userguide/getting-started-install.html
  2. Bucket name: s3://chimera-challenge/v2/task1/
  3. Command line: aws s3 sync --no-sign-request s3://chimera-challenge/v2/task1/ <destination_path>
Public Data

We strongly recommend exploring the LEOPARD Challenge on the Grand Challenge platform, which focused on predicting time to biochemical recurrence using H&E-stained whole-slide images (WSIs). This dataset can be valuable for both training and pre-training your algorithm.

For additional pre-training purposes, consider the following datasets:

PI-CAI: Prostate Imaging—Artificial Intelligence Challenge for prostate cancer detection in MRI.

PANDA: Prostate cANcer graDe Assessment Challenge focused on automated grading of prostate cancer in WSIs.

TCGA-PRAD: The Cancer Genome Atlas Prostate Adenocarcinoma Collection, which includes histopathology images and corresponding genomic data.

Task 2

Modalities: histopathology (WSI) and clinical data

Download Training Data
  1. Install AWS CLI https://docs.aws.amazon.com/cli/latest/userguide/getting-started-install.html
  2. Bucket name: s3://chimera-challenge/v2/task2/
  3. Command line: aws s3 sync --no-sign-request s3://chimera-challenge/v2/task2/ <destination_path>

Task 3

Modalities: histopathology (WSI), bulk RNA-seq and clinical data

Download Training Data
  1. Install AWS CLI https://docs.aws.amazon.com/cli/latest/userguide/getting-started-install.html
  2. Bucket name: s3://chimera-challenge/v2/task3/
  3. Command line: aws s3 sync --no-sign-request s3://chimera-challenge/v2/task3/ <destination_path>